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Focusing on

Developing statistical methods and tools to deal with omic and exposome data
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Next Generation Sequencing
Developing analysis tools and statistical methods to detect mosaicims and analyze RNA-seq data
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Genomic Inversions
Developing analysis tools and new statistical methods to detect inversions using SNParray data and a...
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CNVs and imputed SNPs
Developing models to incorporate uncertainty in genetic association studies
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Genetic mosaicisms and health
We have developed a method (MAD) to detect genetic mosaicisms using SNP array data that has been use...
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Data Protection
Developing non-disclosive statistical methods and tools to study omic and exposome data
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Our Team


June 8, 2020
NameSourceLatest updateeSet_EGCUT350MB08/06/2020 download
October 31, 2017
This package was built when I was working at Xavier Estivill’s lab at Center for Genomic Regulation and it is written in collaboration with Victor Moreno and his colleagues. The R package SN...
August 31, 2017
rexposome is an R package for exposome characterization and exposome-outcome test association. It was developed by Carles Hernandez-Ferrer as part of its PhD project and used in the analysis...
August 31, 2017
The *Comparative Toxicogenomics Database* is a public resource for toxicogenomic information manually curated from the peer-reviewed scientific literature about chemicals, gene and health ou...
August 31, 2017
This R package is built to extend the capabilities of the R package rexposome and to allow to find exposome molecular signatures. This is archived by implementing a limma wrapper that works ...
MAD (Mosaic Alteration Detector)
July 31, 2017
This is a joint work with Benjamin Rodriguez-Santiago (qGenomics) and Luis Pérez-Jurado (UPF). MAD is a software tool to detect mosaic events from SNP arrays using BAF and LRR values. The al...
July 31, 2017
`inveRsion` is an R package for the detection of genetic inversions using SNP-array data. This is a joint collaboration with Alejandro Caceres (ISGlobal) and Suzanne Sindi (Center for Comput...
July 31, 2017
`tweeDEseq` is an R package for analyzing RNAseq count data. It implements Poisson-Tweedie family of distributions to model count data distribution. This family includes Poisson and Negative...
July 31, 2017
Joint with Alejandro Cáceres (ISGlobal), we have developed a method that can be applied to common GWAS for calling the inversion genotypes, which accounts for population stratification when ...